rs253506163 SNP Detail

Summary

• ID
  rs253506163
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91067344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATTTCTTG GGAGCCATGA
  CGTACTCGGT GAAGAGATAT CAAGCTCTGT GGCAAAATAA CGAAGCAAGG AGTGGAAAAG
  CCTCCGTGGA GAAAACAGGA AGGGACTACG TATGAGGCAG CGCCGTCGCA GGTAGCGCAG
  CTAAGACACC TTCGCGCCAA ACGCTCCTCC GGGCTGCTTT ACTTTTAGCC CCGCCCCGTC
  Y
  CCTCAGGGCT GTCCCGCCCC TTGGAACTGC CCCGCCCCCT CGGGATTGCC ACAGTAGGGG
  GCTGTCTTGC CCCCGGAACT GCCCCGGACT GCCCCAACCC CTCGGGCACG GCCCGCCCCC
  GGCCGCTCCT CCTCTTCCGG AGTAACGTGT GCAGCTCACA GGGAGGGTTT TTTATTTTAA
  CTCCCTAGGA GCTGGGCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354810013	MGP_WTSI_2_91077156	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253506163					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354810013	MGP_WTSI_2_91077156	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91067344 () rs orientation: forward

Symbol	Name	Function Class
A330069E16Rik	RIKEN cDNA A330069E16 gene	147 bp upstream
Cpgi11902	CpG island 11902	within coordinates
Ddb2	damage specific DNA binding protein 2	17 bp upstream
Rr397126	regulatory region 397126	within coordinates
Rr560675	regulatory region 560675	1379 bp distal
Rr560676	regulatory region 560676	within coordinates
Rr560677	regulatory region 560677	147 bp proximal
Rr560678	regulatory region 560678	278 bp proximal
Rr560679	regulatory region 560679	595 bp proximal
Rr560680	regulatory region 560680	981 bp proximal
Tssr18884	transcription start site region 18884	111 bp upstream
Tssr18885	transcription start site region 18885	173 bp upstream
Tssr25176	transcription start site region 25176	144 bp upstream
Tssr25177	transcription start site region 25177	127 bp upstream
Tssr25178	transcription start site region 25178	78 bp upstream
Tssr25179	transcription start site region 25179	34 bp upstream
Tssr25180	transcription start site region 25180	10 bp upstream