rs253507522 SNP Detail

Summary

• ID
  rs253507522
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:124783967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCTGGAAG AAAAGCTGGC
  TTATTAGGGC TAATAGTGTG GGATTTAAAT ATATACAACC ATGGCTTGCT CAGCCTGCTT
  TCTTATAGAA TCCAGGACCA CCTTGCCCAG GGATGGCACC ACCACAATGG GCTCCCCCGT
  GCCCCACCCC CAACCTCACA TCAATAACTA ATTAAGAAAA TGCCTAAGCC AGGAGTGGTG
  R
  CGCAGGCCTT TAATCCCAGC ACTCAGGAGG CAGAGGCAGG TGGATTTCTG AGTTTGAGGT
  CAGCCTGGTC TACAGAGTGA GTTCCAGGAC AGCCAGGGCT ATACAGAGAA ACCCTGTCTC
  AAGAAAATGC CACCACTAGA TCTGGCTATA AGGCATTTTC TTTCTTTCTT TCTTTCTTTC
  TTTCTTTCTT TCTTTGTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369943151	MGP_WTSI_6_124757022	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253507522					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369943151	MGP_WTSI_6_124757022	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:124783967 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17970	CpG island 17970	1125 bp distal
Cpgi17971	CpG island 17971	1671 bp proximal
Gm67865	predicted gene, 67865	861 bp upstream
Gm67886	predicted gene, 67886	126 bp downstream
Rr145728	regulatory region 145728	1033 bp proximal
Rr399917	regulatory region 399917	1171 bp downstream
Spsb2	splA/ryanodine receptor domain and SOCS box containing 2	1673 bp upstream
Tssr58845	transcription start site region 58845	1150 bp downstream
Tssr58846	transcription start site region 58846	1654 bp upstream
Tssr58847	transcription start site region 58847	1894 bp upstream
Tssr58848	transcription start site region 58848	1932 bp upstream
Tssr63166	transcription start site region 63166	1259 bp upstream