rs253512680 SNP Detail

Summary

• ID
  rs253512680
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:184545089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATGATATGT CTTTTGACAT CATCAGCTAT
  ATGCCTTAGA Ccagccgttc tcaaccttcc taatacggct cctcatgtgg tggcgacccc
  caaccataaa attcttttca ctgctacttc atacctgtaa tagtgctact gttaggaatc
  S
  tatcgtaaat acctgatagg caggatatct gatatgtggc ccctgtggaa ggatcgtgac
  ccacaggttg agaagtgcCC TGTACACACC AGTGACCAAT TAAGGCTTAG AACCCAGGGA
  AGACACGTGG TGATCTTGTA AAATGAGTAA                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320169580	CHEV_1_186636771	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253512680					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184545089 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1161	CpG island 1161	1555 bp distal
Gm70890	predicted gene, 70890	30 bp downstream
Mtarc1	mitochondrial amidoxime reducing component 1	1695 bp upstream
Mtarc2	mitochondrial amidoxime reducing component 2	176 bp downstream
Rr425290	regulatory region 425290	958 bp distal
Rr425291	regulatory region 425291	452 bp distal
Rr425292	regulatory region 425292	523 bp distal
Rr425293	regulatory region 425293	375 bp distal
Rr425294	regulatory region 425294	1553 bp proximal
Tssr15650	transcription start site region 15650	1901 bp upstream
Tssr15651	transcription start site region 15651	1729 bp upstream
Tssr15652	transcription start site region 15652	1689 bp upstream
Tssr15653	transcription start site region 15653	1628 bp upstream
Tssr15654	transcription start site region 15654	1589 bp upstream
Tssr15655	transcription start site region 15655	1578 bp upstream