rs253515637 SNP Detail

Summary

• ID
  rs253515637
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70908642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTGACTTC TAGAAGACAG
  ATCAATGTTA AAGTTGTACC AGAACTGAGT TTATGAGCTG GCCCAAGAGG ACTAACAACA
  GTGGTAGGTA GGTGTGTCTG GGTGGAAAAA ACACAAAATA AGGCTGGCTA TCCTGTGAAA
  CTCCCTGGGC AGCCAGCTCA TCAGTCTATT CTCAGATCAC ATTATTATTA CTGTTGTTGT
  Y
  GTTGTTGGTT GTTGTTCCTG TTGTTTGTGT GTTGAGACAA TTCCTTGGTA TGTAGTTCAA
  GGTGGGCTCA GGTTCCTGAC TGCTGGGACT ATGGCCACAT TAGTTCTTAA CTAGTTGTAG
  TCAAATATAA AATCTCAACA CATCAAAGAC ACACTAAAAA TTATGTTCTT AAGACAGTCT
  CTCTCTCTCT CTAGCTCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323738895	CHEV_11_70831318	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253515637					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70908642 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3205	CpG island 3205	1148 bp proximal
Derl2	Der1-like domain family, member 2	within coordinates
Mis12	MIS12 kinetochore complex component	1795 bp upstream
Rr369277	regulatory region 369277	1963 bp upstream
Rr402697	regulatory region 402697	1389 bp upstream
Rr450471	regulatory region 450471	1416 bp proximal
Rr450472	regulatory region 450472	1806 bp proximal
Tssr102806	transcription start site region 102806	1754 bp upstream
Tssr102807	transcription start site region 102807	1777 bp upstream
Tssr102808	transcription start site region 102808	1810 bp upstream
Tssr102809	transcription start site region 102809	1825 bp upstream
Tssr109052	transcription start site region 109052	682 bp downstream
Tssr109053	transcription start site region 109053	1417 bp downstream
Tssr109054	transcription start site region 109054	1454 bp downstream