rs253520996 SNP Detail

Summary

• ID
  rs253520996
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28393639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCTGAGAG ACAGGATGCA
  CAGAGAGGCA CCAAGAGCAA TTAAAATCAA CACATAAATA TCTTTTGTTT CATTGGCTTT
  TACATTTTAA CAATTTATTT TCGTCCCTGC GCCTGGAGTT TCAGGAGACT AAGCCTCATG
  GCTTGGGAGC TGGGAACTGA CCCCAGGTCC TCTAGAAGAG CAGTTACAAA TTTTTAAATT
  K
  TGTTAGTATA TTTTGTTTTT GTTGTTGTTT TGCTTTTTGT TTTTGCGGGT TGGAAAGATA
  GCTCAGCGGC TAAGAGCTGC TCCTCCAAAG GACCTAAGCT CAGTTCCAAA CACTCAAGTG
  GAGACTCACA ACCATCTGTA ACTCAAGTCT CAGGGAGACC ACCCTTTCTT CTGGCCTCTG
  GAGAGAGGGC ATATATACAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370864847	MGP_WTSI_7_29479233	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253520996					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370864847	MGP_WTSI_7_29479233	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28393639 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18715	CpG island 18715	463 bp distal
Fbxo27	F-box protein 27	within coordinates
Rr644337	regulatory region 644337	1060 bp distal
Rr644338	regulatory region 644338	185 bp distal
Rr644339	regulatory region 644339	69 bp distal
Tssr65494	transcription start site region 65494	1380 bp downstream
Tssr65495	transcription start site region 65495	1344 bp downstream
Tssr65496	transcription start site region 65496	1204 bp downstream
Tssr65497	transcription start site region 65497	1193 bp downstream
Tssr65498	transcription start site region 65498	1171 bp downstream
Tssr65499	transcription start site region 65499	202 bp downstream
Tssr71557	transcription start site region 71557	1041 bp downstream