rs253522696 SNP Detail

Summary

• ID
  rs253522696
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:12937771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCCCACAG CGCTCTTCCT
  TTCTTTCCCT CAACAGCCTG AGGTGGACAG GGAGAGGGGG CAGCTGGCCC AGAGGGGGGC
  TGGGCAAGGG GAGGGGCCGG GCCGGGCGCT GAGGGCGGGG CTTGGAGGGG GAGGGCCCTG
  ATGGGGGCGG AGAAGCGCTG AGCCTTGGGC GGTGCTGAGA CTAGTGGGAG TCTGCGCTGC
  Y
  GCTGCTGTTG CTGCCGCCGT CGCCGCCGCC TCCGACACTG CCACCGCCAC CGCCACCACC
  ACCGGCCGTG CGGGTTTTCT TTCTTTTTCT TTCTGTCTTT TCTTTTCTTT CTTGATTTGT
  TGGGTTCGCC ATATTGACGA GGCTGTGGTA CCCAAGGCTG CGGAAGCTAG AGTCCGCCGG
  TGGCGGAGCC GCAAGCTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403087100	MGP_WTSI_X_12648658	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253522696					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403087100	MGP_WTSI_X_12648658	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:12937771 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22632	CpG island 22632	within coordinates
Gm61952	predicted gene, 61952	within coordinates
Gm61953	predicted gene, 61953	178 bp downstream
Rr406088	regulatory region 406088	within coordinates
Rr690195	regulatory region 690195	1121 bp distal
Rr690196	regulatory region 690196	8 bp distal
Rr690197	regulatory region 690197	193 bp distal
Rr690198	regulatory region 690198	within coordinates
Rr690199	regulatory region 690199	386 bp proximal
Tssr160578	transcription start site region 160578	450 bp downstream
Tssr160579	transcription start site region 160579	363 bp downstream
Tssr160580	transcription start site region 160580	235 bp downstream
Tssr160581	transcription start site region 160581	33 bp downstream
Tssr160582	transcription start site region 160582	within coordinates
Tssr160583	transcription start site region 160583	92 bp upstream
Tssr160584	transcription start site region 160584	467 bp upstream
Tssr160585	transcription start site region 160585	522 bp upstream
Tssr160586	transcription start site region 160586	1274 bp upstream
Tssr163012	transcription start site region 163012	392 bp downstream
Tssr163013	transcription start site region 163013	1016 bp downstream
Usp9x	ubiquitin specific peptidase 9, X chromosome	within coordinates