rs253523929 SNP Detail

Summary

• ID
  rs253523929
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:95239792 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    aacaaacaa aacaaaacaa aacaaaacaa
  aaAAACAGGT GTTACAAGAA TGTCTATACT GACTACAGCA GACCTGTGGG CAAATGACAG
  TGTATCTGCA CAAATTATAG CACAACACCT ATTGAGAATG AAGAACTATG TTTGTATCAA
  Y
  CAGAGATCTC TTGTTGGCCA AGAGGTTGTT ATGGAGGCTT TTTTGACCCC TCGGGAAAAT
  ACTATAGAGT CAATTACATT ATAATTAAAA GATGCATTGA TTATCTGCTA GCAGGGCAAT
  AGTCTTAAAG CCCAAGCTCA TGCATGTTGT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319848290	CHEV_1_97208644	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253523929					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:95239792 () rs orientation: forward

Symbol	Name	Function Class
Cpgi614	CpG island 614	1361 bp proximal
Fam174a	family with sequence similarity 174, member A	1561 bp upstream
Rr396183	regulatory region 396183	1294 bp upstream
Rr416130	regulatory region 416130	1066 bp proximal
Tssr8214	transcription start site region 8214	1540 bp upstream
Tssr8215	transcription start site region 8215	1611 bp upstream
Tssr13058	transcription start site region 13058	1988 bp downstream