rs253528634 SNP Detail

Summary

• ID
  rs253528634
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:128513153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCCTGGA GTTCTTGGGT
  TAAACACAAA TGGGGATGTT TTATAAGCAA AATAATATAT CAACACGATG TTGTCATGGC
  ATTTGACCTG AGAAGACTGG ATGTAGGGAG GGCTCCAGCC CTGCTCTCAG ACACTGGGGC
  AAGAAAAGAA AGGCCTTTAC CTTGACCTGA ACTGCCAGGA CAGGGCTGGG ACCTAAGTGG
  R
  AAGAGAAAGA GAAAGAAAGG AGCTTTGTGG TCACCTCAAA CTATGAAGCA AAGCACTGGA
  CACAGATCAA CATCTGTTCA TGATTTGAAA AACTAACAGA CTCAGAGAGA AGAAAATCCT
  GTTAACATCA AATGACATAG CTTGCCAAGA CCTATAAAAG AGTATCGTTC TCAGCACCTC
  TGACTTACAG CCGGGAAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321305848	CHEV_4_128296604	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253528634					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:128513153 () rs orientation: forward

Symbol	Name	Function Class
Tlr12	toll-like receptor 12	741 bp upstream
Tssr43437	transcription start site region 43437	1033 bp upstream
Tssr43438	transcription start site region 43438	763 bp upstream
Tssr43439	transcription start site region 43439	735 bp upstream
Tssr43440	transcription start site region 43440	714 bp upstream