rs253532235 SNP Detail

Summary

• ID
  rs253532235
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:67376282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCTGGATT TTTTCCATCT
  CCGTGCCAGA GAGATCCACA CGGTGCTGCT GGCCCAGATC GAAAGCCGTT TCCCTGTCCT
  CTGGACTCCC TGCGAGTGCC CCCTCCACTC ACGCCACTCT CTACCATCCG TAATTTTACT
  CTGGGGGGTC CCGGTGCTGG AGTCACGGGA CCAGGAGCAA GTGGAGGTGG TGAGGGACCT
  M
  GGCTGCCTGG CAGTGGGTCT GCAGCAGTGA CTGCCACCCC TTATAATCCG CACCACCTGC
  CATTGCGGCC CATCCTGCGA CCTCGAAAGT ACCCTAACAG GCCCAGCAAA ACGCCAGTGC
  ACGAAAGGCC CTATCCCTGC CCAGCAGAAG GTTGTGATAG GAGGTTCTCA CGCTCTGATG
  AGCTGACCAG GCACATCCGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380736059	MGP_WTSI_10_67003200	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253532235					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380736059	MGP_WTSI_10_67003200	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:67376282 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1670	CpG island 1670	1233 bp distal
Egr2	early growth response 2	within coordinates
Rr433077	regulatory region 433077	1759 bp distal
Rr433078	regulatory region 433078	911 bp distal
Tssr93838	transcription start site region 93838	1953 bp downstream
Tssr93839	transcription start site region 93839	1883 bp downstream
Tssr93840	transcription start site region 93840	1189 bp downstream
Tssr93841	transcription start site region 93841	643 bp downstream
Tssr93842	transcription start site region 93842	574 bp downstream
Tssr93843	transcription start site region 93843	500 bp downstream
Tssr93844	transcription start site region 93844	451 bp downstream
Tssr93845	transcription start site region 93845	411 bp downstream
Tssr93846	transcription start site region 93846	363 bp downstream
Tssr93847	transcription start site region 93847	295 bp upstream
Tssr97953	transcription start site region 97953	1280 bp upstream
Tssr97954	transcription start site region 97954	279 bp upstream