rs253533210 SNP Detail

Summary

• ID
  rs253533210
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:74545267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gcccccgcc gTGACGACAC TGTAATACAC
  ATGCGCACCG TCCACTTTAC CAACTTTGGC CCTCCTACCA TTTTCCTCAC GCGCAACCGC
  TTGAGCATGC GCAATTCGTG TCCTTCCAAG CCTGCTGGCC TTTTCCCGCC CTTGTCTGGC
  Y
  TTCGGGAGAA AGTCAGAGTT CACGTCTCTC AAAGGATTTA CCTGCGATGC TGTGGGGATA
  CGAGGGCCAG TAGTTTGCAG ACGTCATTTT GATCCCGAAT CTGAAGGTTC AAAGAACATA
  CTTTGAGATT ATTTGCTAGG CCGAGGTCCG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319794731	CHEV_1_74552682	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253533210					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:74545267 () rs orientation: forward

Symbol	Name	Function Class
Cnot9	CCR4-NOT transcription complex, subunit 9	within coordinates
Cpgi385	CpG island 385	within coordinates
Rr396106	regulatory region 396106	32 bp downstream
Rr413210	regulatory region 413210	316 bp distal
Rr413211	regulatory region 413211	40 bp distal
Rr413212	regulatory region 413212	within coordinates
Rr413213	regulatory region 413213	536 bp proximal
Tssr7425	transcription start site region 7425	70 bp downstream
Tssr7426	transcription start site region 7426	3 bp downstream
Tssr7427	transcription start site region 7427	3 bp upstream
Tssr7428	transcription start site region 7428	201 bp upstream
Tssr7429	transcription start site region 7429	270 bp upstream
Tssr7430	transcription start site region 7430	594 bp upstream
Tssr12315	transcription start site region 12315	395 bp upstream
Tssr12316	transcription start site region 12316	264 bp upstream
Usp37	ubiquitin specific peptidase 37	within coordinates