rs253536159 SNP Detail

Summary

• ID
  rs253536159
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13439639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGATTTACC CTGACAGATT
  CCTGTCTCTG ATGCAGAAGG AGCCCATGTA GAATACCCCC TGCTTCTCCA GTCTGAATCA
  ACAACTCAAG ACCCCTGCTG GCTAAGATTT CTTAAGAGCA GAACATGATG AGTGTGTGTG
  GAGTCCGGGT GGGTAGATGA AGGGCCCAGT CCCCCATCGT TGAGTGTGGG GAGGGGCCAT
  Y
  TCCAGAGCAG GACCCTTGTA ACTCACTCTG TTCATTTTAA TAATGAAGCA GGGCTTCCCC
  TCCTCGAAGC CGAAGCTGGG GTCCGCCAGG CCTGAGCAGT TTTGTAGCAT GTCTGCAGTG
  AACTTGCAGG AGAACTTGGT GTGGTTTGGA GCTGCAAAGC TCTCCTGGAA GAAGTACTTT
  TCAGATGTAC AGTTGATGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322506492	CHEV_8_13389639	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253536159					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13439639 () rs orientation: forward

Symbol	Name	Function Class
Atp4b	ATPase, H+/K+ exchanging, beta polypeptide	within coordinates
Gm45410	predicted gene 45410	1467 bp upstream
Rr659923	regulatory region 659923	1209 bp proximal
Tssr80441	transcription start site region 80441	824 bp upstream
Tssr80442	transcription start site region 80442	54 bp downstream
Tssr80443	transcription start site region 80443	220 bp downstream
Tssr80444	transcription start site region 80444	460 bp downstream