rs253536262 SNP Detail

Summary

• ID
  rs253536262
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128658527 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATAACCCA GAAAGTGCTT
  CCGTTCTCTT TTAACAAGGT GGGGTTAAGA CCCCGCACTC GAATTTTTAA AATCAAGGAG
  AGGAGAGGCC TTAAGATAGG TTTCTCGGTG GAAACCTGGG GTAGAGGCTT CTCCAAAAGG
  TTGTAAGATG GCAAACACAT CAATCCTAAA AGTTTTTCGA GTTTTCTCAG GAGGTTCTCA
  R
  TGACCTGCCC TCCCTCCCCT GACTATCCTA CCTCTAGAGA GAGAACGTGT AGGGTAGATA
  GCTGTAATAT GAGAGGTGTA TGAAGTATGT TTGAAAACCT TAGGATTTTG TTTGTCCTTT
  TAACCTTTGG GAAGGATCCC AGCTCTCTTG ATGTCACCCC CAACTCCCTT TTTGGGTCTA
  TTTTTGTTAT TTCCGTGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323536216	CHEV_10_128259714	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253536262					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128658527 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2421	CpG island 2421	491 bp distal
Ormdl2	ORM1-like 2 (S. cerevisiae)	1029 bp upstream
Rr402366	regulatory region 402366	836 bp downstream
Sarnp	SAP domain containing ribonucleoprotein	within coordinates
Tssr96458	transcription start site region 96458	921 bp downstream
Tssr96459	transcription start site region 96459	885 bp downstream
Tssr96460	transcription start site region 96460	858 bp downstream
Tssr96461	transcription start site region 96461	745 bp downstream
Tssr99967	transcription start site region 99967	1026 bp upstream