rs253537242 SNP Detail

Summary

• ID
  rs253537242
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:20987707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CGAGCATTG GGTACAGCAG ATGATGTCCG
  AATGTCCCTT GGAGCCCAGT ATGCCATGGT AGGAAGGCAG CCATGAGTTC AAAATTCAAG
  AACAACTTGT CTTACTTAGT AGCTACAGGC TATCCTAGGA TATGATGGGG ACCTTGCATT
  W
  cacacacaca cacacacaca cacacacaca cacacacaca cTGGAGGATG GAATAGATAG
  TCACAGAGAG AGTCAGATAC AGAGAGATAG ACACAGAGAC AGAAATCTAT GGCCTCTGGT
  GCGCTGTTCT GTTTACTCTC TTTGCTGACT                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319654648	CHEV_1_20907564	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253537242					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:20987707 () rs orientation: forward

Symbol	Name	Function Class
Gm24171	predicted gene, 24171	1943 bp upstream
Paqr8	progestin and adipoQ receptor family member VIII	within coordinates
Tssr6058	transcription start site region 6058	357 bp upstream
Tssr6059	transcription start site region 6059	373 bp upstream