rs253538524 SNP Detail

Summary

• ID
  rs253538524
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70704805 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCATTTATG AAAGTCTAAA
  ACTGGATACA ACCAAAATGT CCACCAACAG TTAAATTATG ACATGTTCAC AATTGAGCTA
  TTACTTAATA AGGAGAATTA ATAAAATAAA ACTTAAGAGC ATAGTTTAAT CTCATAAACA
  AGATAATAAG CAAAACAAAA CATTTTTTCA TCCATGTAAG TTTAAAAGCA GGTAAAATTT
  W
  AAATTAAGAG AGACATAAGT TTTGAGGTAG CAAGATGGAA ACTCTGGGGC TTGGGGAATG
  TTCTGTCTCT CTGTATGGGA TGTGAAAGTT ACTATTGTGG AATTGGGATC TATGTTCTTC
  CTGTATATAT TGTATACTTC ATAATAACTT CACCTAAAGA AATATCTAAT ACCCAGTGCA
  TACATAAAAG AGGATACAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368707631	MGP_WTSI_6_70677815	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	T	T	A	A	A	A	A	T	A	A	A	A	T	A	A	T	T	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253538524					SNP	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	T	T	A	A	A	A	A	T	A	A	A	A	T	A	A	T	T	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368707631	MGP_WTSI_6_70677815	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70704805 () rs orientation: forward

Symbol	Name	Function Class
Gm30211	predicted gene, 30211	1392 bp upstream
Gm68839	predicted gene, 68839	855 bp upstream
Igk	immunoglobulin kappa chain complex	1067 bp downstream
Igkc	immunoglobulin kappa constant	1067 bp downstream
Rr158	regulatory region 158	1870 bp distal
Rr399685	regulatory region 399685	1974 bp downstream
Rr399686	regulatory region 399686	1010 bp downstream
Tssr1880	transcription start site region 1880	970 bp downstream
Tssr56956	transcription start site region 56956	1988 bp downstream
Tssr56957	transcription start site region 56957	1349 bp downstream
Tssr56958	transcription start site region 56958	1333 bp downstream
Tssr56959	transcription start site region 56959	1315 bp downstream
Tssr56960	transcription start site region 56960	1300 bp downstream
Tssr56961	transcription start site region 56961	1284 bp downstream
Tssr56962	transcription start site region 56962	1272 bp downstream
Tssr56963	transcription start site region 56963	1225 bp downstream
Tssr56964	transcription start site region 56964	1214 bp downstream
Tssr56965	transcription start site region 56965	1202 bp downstream
Tssr56966	transcription start site region 56966	1194 bp downstream
Tssr56967	transcription start site region 56967	1174 bp downstream
Tssr56968	transcription start site region 56968	1144 bp downstream
Tssr56969	transcription start site region 56969	1120 bp downstream
Tssr56970	transcription start site region 56970	1101 bp downstream
Tssr56971	transcription start site region 56971	1089 bp downstream
Tssr56972	transcription start site region 56972	1030 bp downstream
Tssr56973	transcription start site region 56973	1019 bp downstream
Tssr56974	transcription start site region 56974	989 bp downstream
Tssr56975	transcription start site region 56975	952 bp downstream
Tssr61321	transcription start site region 61321	1312 bp upstream
Tssr61322	transcription start site region 61322	1164 bp upstream
Tssr61323	transcription start site region 61323	1083 bp upstream
Tssr61324	transcription start site region 61324	1006 bp upstream
Tssr61325	transcription start site region 61325	973 bp upstream
Tssr61326	transcription start site region 61326	960 bp upstream
Tssr61327	transcription start site region 61327	934 bp upstream
Tssr61328	transcription start site region 61328	856 bp upstream