rs253540065 SNP Detail

Summary

• ID
  rs253540065
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:45819641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCACTGAA AATCCAACTT
  GGTGAGACGG GGCCAGCTCC TTAGTCCTTC TTGCCAGTCA TTTCCTCTCT CCCAGTTACC
  CACATGCACT TATACTACAT TTTATTTCCA TTATCTGGCT TTCTCCCTGA TTGACAGTTA
  GGTCTTGCTA AGCCCTTAAA GAAGCAAATG AAAATAACAT GATAGGTTAA GAAGTGGGGT
  R
  TCTGGGTTCT GTATTGGTGT GGCCTTATTG TGATGAATGT CTCCTAGTCT GTGGCCTGTT
  TTAGATCCCT GGAAATGACA TTTAACACTG GTCACTGGTC AGGCCTGGCC TTCACTTTAG
  TTTCTGCTTT GCTGGCTTTA GTGGGACACC TTTTTGTTGT TGTTTCTGTA CTTGGGGTCC
  ACAGGTCTGC AGCTGTGTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377444912	MGP_WTSI_9_45716426	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253540065					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377444912	MGP_WTSI_9_45716426	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45819641 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi21697	CpG island 21697			969 bp distal
Pcsk7	proprotein convertase subtilisin/kexin type 7			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rnf214	ring finger protein 214			1432 bp upstream
Rr677992	regulatory region 677992			1947 bp distal
Rr677993	regulatory region 677993			1836 bp distal
Rr677994	regulatory region 677994			1881 bp distal
Rr677995	regulatory region 677995			1485 bp distal
Rr677996	regulatory region 677996			1813 bp distal
Rr677997	regulatory region 677997			1348 bp distal
Rr677998	regulatory region 677998			915 bp distal
Rr677999	regulatory region 677999			322 bp distal
Tssr84815	transcription start site region 84815			1791 bp downstream
Tssr84816	transcription start site region 84816			1330 bp downstream
Tssr89273	transcription start site region 89273			1906 bp upstream
Tssr89274	transcription start site region 89274			1449 bp upstream
Tssr89275	transcription start site region 89275			1422 bp upstream
Tssr89276	transcription start site region 89276			754 bp upstream