rs253542037 SNP Detail

Summary

• ID
  rs253542037
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:5913073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCATGCCGG CTTAATTGTT
  CACAATCCTC TCTGCCTTTC TCTCCCCCTC TCCATTTTTC CTCCTCAAAG AAGCTGCTCC
  CTGGGACGTG ATTGAAATTG ATCTTAGTAG TTTCCTTTAG GCATTTGGGA TTTGGGCAAC
  TAGCCAGACT TGGCTCCTGG TCCCCTTCAG AGCCTTTTAA ACTCCCAGAG AGCTTCGATC
  R
  GGTCCCCACT GCTCATCAGC ATACTGGCGA TTTTAAATTA GCCAGTTGAT TAAAGTTTAA
  CAAGATCTTC ATAAATGTCT TCGCCATTTC TTTGGAACAT CAATAATAGG TATCGCCGCT
  TCGATTCCTA ATACTGTACA CACTGTAACA GACATCGAAT TTTGGGGGGA AATGGAAAAC
  AGGCACCCCC TCTTCCTTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387605996	MGP_WTSI_13_5862320	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253542037					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387605996	MGP_WTSI_13_5862320	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:5913073 () rs orientation: forward

Symbol	Name	Function Class
B230207M22Rik	RIKEN cDNA B230207M22 gene	1876 bp upstream
Cpgi5253	CpG island 5253	1138 bp distal
Klf6	Kruppel-like transcription factor 6	Intron
Rr387905	regulatory region 387905	503 bp downstream
Rr403559	regulatory region 403559	1466 bp upstream
Rr474541	regulatory region 474541	1887 bp distal
Rr474542	regulatory region 474542	1582 bp distal
Rr474543	regulatory region 474543	1433 bp distal
Tssr118237	transcription start site region 118237	1573 bp downstream
Tssr118238	transcription start site region 118238	1548 bp downstream
Tssr118239	transcription start site region 118239	1524 bp downstream
Tssr118240	transcription start site region 118240	1510 bp downstream
Tssr118241	transcription start site region 118241	1437 bp downstream
Tssr118242	transcription start site region 118242	1401 bp downstream
Tssr118243	transcription start site region 118243	1199 bp downstream
Tssr118244	transcription start site region 118244	453 bp downstream
Tssr118245	transcription start site region 118245	202 bp downstream
Tssr118246	transcription start site region 118246	741 bp upstream
Tssr118247	transcription start site region 118247	807 bp upstream
Tssr118248	transcription start site region 118248	1412 bp upstream
Tssr118249	transcription start site region 118249	1617 bp upstream
Tssr118250	transcription start site region 118250	1676 bp upstream
Tssr118251	transcription start site region 118251	1696 bp upstream
Tssr118252	transcription start site region 118252	1776 bp upstream
Tssr121316	transcription start site region 121316	1901 bp upstream
Tssr121317	transcription start site region 121317	1870 bp upstream
Tssr121318	transcription start site region 121318	1793 bp upstream
Tssr121319	transcription start site region 121319	1231 bp downstream
Tssr121320	transcription start site region 121320	1255 bp downstream
Tssr121321	transcription start site region 121321	1278 bp downstream
Tssr121322	transcription start site region 121322	1299 bp downstream