rs253544151 SNP Detail

Summary

• ID
  rs253544151
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:27837278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAATTTTG ATGAGAGGTG
  GGGAACCCAT TGTGTCTGCT TGGTACCAGA GCACTGATTA CGCTTCAGTC CAGTGACAGG
  CAATGACAGA AACACTGAGA CATCCAAGAC ACTCCAGGGA CACACACAGT AGTGAACAGG
  ATAGACCACA GTGATTGAGG TTGCCACAAG AGGGCACTCT AGCATATCTG GAGATTAGTT
  K
  GAGAGGGATG CAGGATAAGA CACTAGGGGA ATTCAAGAGG GATAAAGGAT GCTAGAGGGC
  GAGTAGGGGA CAGTTACAGA GAAGATTTTC CTAGAATAAA ATTTTCAAAT CTAAAATTCA
  TGGGAAGGAC TGGAATATCC AAAAAGGGGA AAACGGATGT GGGCTCCTTC CTGACCCAGG
  GAACCACAGA GGTTTGTCAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370854178	MGP_WTSI_7_28922872	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	G	G	G	G	G	G	G	G	G	G	G	G	G	T	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253544151					SNP	T	T	T	G	G	G	G	G	G	G	G	G	G	G	G	G	T	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370854178	MGP_WTSI_7_28922872	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27837278 () rs orientation: forward

Symbol	Name	Function Class
Fcgbpl1	Fc fragment of IgG binding protein like 1	Intron
Gm21925	predicted gene, 21925	within coordinates
Gm38976	predicted gene, 38976	within coordinates
Rr644170	regulatory region 644170	within coordinates
Rr644171	regulatory region 644171	20 bp distal
Tssr65386	transcription start site region 65386	742 bp downstream
Tssr65387	transcription start site region 65387	409 bp downstream
Tssr65388	transcription start site region 65388	311 bp downstream
Tssr65389	transcription start site region 65389	257 bp downstream
Tssr65390	transcription start site region 65390	1869 bp upstream
Tssr65391	transcription start site region 65391	1900 bp upstream
Tssr65392	transcription start site region 65392	1922 bp upstream
Tssr71448	transcription start site region 71448	746 bp upstream
Tssr71449	transcription start site region 71449	733 bp upstream
Tssr71450	transcription start site region 71450	721 bp upstream
Tssr71451	transcription start site region 71451	314 bp upstream
Tssr71452	transcription start site region 71452	1913 bp downstream
Tssr71453	transcription start site region 71453	1936 bp downstream
Tssr71454	transcription start site region 71454	1963 bp downstream