rs253547538 SNP Detail

Summary

• ID
  rs253547538
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:51107793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCGTTGGCA CCTTAGTGTC
  CATTACTGTT AAACGTGTCA GTCTAGTGAG TTTCTGTTGC CAAAAGTGAT CACAACACTC
  TTCATTTGTT ACAGTCACTC CCTCCTAGGA TTCTTTAAGG CAAAAGGAAC CCATTCTCTC
  TGAGCATCTA TCCCTCCGCC CCACTAAGGC CACCCCACCT CCCTGCCAGC CGCCCGGAAG
  R
  ACTAAGCGGC TGCACCACGC TCGCCCAGAG GTCCTTCCGG GAGTCCAGCT GACACAGGTC
  TCGGCCAGGG CTCTACCTGC GCTCAGGATT GGAAAAGCTG TGCGCAATGA GAGGCGCGTT
  GGTTCTCCGC AACGGGGAGC AGAAACCGGC CTGGGTCAGC CAGTGGACTG GTTGGAAGCA
  GAGAACTGAA AGAAAACCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391081554	MGP_WTSI_14_51490011	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253547538					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391081554	MGP_WTSI_14_51490011	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:51107793 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6408	CpG island 6408	within coordinates
Gm26782	predicted gene, 26782	within coordinates
Rr404075	regulatory region 404075	178 bp upstream
Rr491714	regulatory region 491714	within coordinates
Rr491715	regulatory region 491715	38 bp proximal
Rr491716	regulatory region 491716	214 bp proximal
Rr491717	regulatory region 491717	1145 bp proximal
Tep1	telomerase associated protein 1	within coordinates
Tssr125373	transcription start site region 125373	19 bp upstream
Tssr128379	transcription start site region 128379	981 bp upstream
Tssr128380	transcription start site region 128380	163 bp downstream
Tssr128381	transcription start site region 128381	221 bp downstream