rs253549747 SNP Detail

Summary

• ID
  rs253549747
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:51366133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAAGTAAA GATGTTTGGA
  CAAAAGGGTC TACTGTGGCA CATACTGTTA TACACTCTGT GAGATGTTTG TTTTCTTTCC
  GTGGGGAAGG TGCAAAGGTG GAGTGCGGAT ACGGAGGGAT GAGTGACGAG AGGGATTGGG
  TGCATGATGT GAAATTCTCA AAAAATCAAT TAAAAGTTTT TTTTGTTGTT GTTTTTTTTT
  W
  AAAGCTATTT TTAAAGATGC GTATGGGGTA AAGGAACTAT ATGAATGTAA TTGCAGGTGC
  CCAAAGAGGC CAAAAGCACC AGCTATATAT ATATATATAT ATATTTTTTT TTTTTTTTTG
  TTAAAAAAAC CTAAAATCAT AGGGCTTCAA AAACGGAAGC TACAGTGAAA AAGGAAGTGC
  TAAGCCCACA GCAAGTGATC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324621292	CHEV_14_51748351	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253549747					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:51366133 () rs orientation: forward

Symbol	Name	Function Class
Rnase6	ribonuclease, RNase A family, 6	within coordinates
Rr404085	regulatory region 404085	2 bp upstream
Rr491778	regulatory region 491778	99 bp distal
Rr491779	regulatory region 491779	97 bp proximal
Tssr125412	transcription start site region 125412	229 bp upstream
Tssr125413	transcription start site region 125413	254 bp upstream
Tssr125414	transcription start site region 125414	304 bp upstream
Tssr125415	transcription start site region 125415	331 bp upstream
Tssr125416	transcription start site region 125416	363 bp upstream
Tssr125417	transcription start site region 125417	379 bp upstream
Tssr125418	transcription start site region 125418	409 bp upstream
Tssr125419	transcription start site region 125419	442 bp upstream