rs253551801 SNP Detail

Summary

• ID
  rs253551801
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:66685761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCAGTAAA TATCATTTCA
  TAATGTGTCT GTCTGTAGCA GGGAAAGCTA CGAGCATGCT GCTGGGTGAG AGAGAAGCCT
  ATTTCTAACG AGAAAAATGG CAGGCAGTAG TGCCTACAAA CTGCTCTCTG TCATTCCCAT
  TTCCAAAGTT GAAAACCCCT CAGAGAGTTC AGTGATTTCC CCACAGTCCA CACTTAGTCC
  K
  AACAGAGCCA GAACAGAGTC TGGGGCCTAT GTCTCAAGGA CCCCACCCAA CAAGTCCAAT
  GCAGAAACTC AAAACAGTCA TTTAGAAACC TTGCTGGGTG TCCTTTGCAA ACATGAATTA
  CAAACAGTGG GGCAGAAGCT AAATTTAGTA CTTGCTATGT AGTAGACAGA TTCAGCTGGC
  TTGTAAAAAG CCAGCTCTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325003332	CHEV_15_66645474	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253551801					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:66685761 () rs orientation: forward

Symbol	Name	Function Class
Rr369944	regulatory region 369944	28 bp upstream
Rr503569	regulatory region 503569	1330 bp distal
Rr503570	regulatory region 503570	829 bp distal
Rr503571	regulatory region 503571	172 bp proximal
Rr503572	regulatory region 503572	218 bp proximal
Rr503573	regulatory region 503573	1026 bp proximal
Sla	src-like adaptor	within coordinates
Tg	thyroglobulin	within coordinates
Tssr131484	transcription start site region 131484	1668 bp downstream
Tssr131485	transcription start site region 131485	1534 bp downstream
Tssr134585	transcription start site region 134585	1809 bp upstream
Tssr134586	transcription start site region 134586	1777 bp upstream
Tssr134587	transcription start site region 134587	1698 bp upstream
Tssr134588	transcription start site region 134588	1263 bp upstream
Tssr134589	transcription start site region 134589	1232 bp upstream
Tssr134590	transcription start site region 134590	1202 bp upstream
Tssr134591	transcription start site region 134591	1180 bp upstream
Tssr134592	transcription start site region 134592	686 bp upstream