rs253552153 SNP Detail

Summary

• ID
  rs253552153
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:130729167 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CATCAGGGT CAACTTAGCA GTCTCCAGCA
  ATGCCAAACC TGGTGATGCT CTGCTCTTCC CTCTGCACAT GCAGACCATC CCAGGAATGG
  GGATGAAAGC AGAAGAGAGA TTCAGAGGTT CTAAGGGTGG GCAGGGAAGT CACACACCCA
  T
  CTGTGATGGA AGATGAGGTG GCTGTGTTTC CCAGTAGACC TCAGAGGGCC CAAGCTGCTA
  AGCTCTGAAT GTGGTTGGGG TAACAAAGAT CTGGGACTCC CAGAGTCCTG CAGAAAAGAC
  TCCTGACGGT CATTGGCAGG GAGGGTGACG                                 
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319973482	CHEV_1_132698007	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253552153					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130729167 () rs orientation: forward

Symbol	Name	Function Class
Fcamr	Fc receptor, IgA, IgM, high affinity	within coordinates
Rr30371	regulatory region 30371	within coordinates
Rr30372	regulatory region 30372	1435 bp proximal
Tssr8570	transcription start site region 8570	790 bp downstream
Tssr8571	transcription start site region 8571	1652 bp upstream