rs253555940 SNP Detail

Summary

• ID
  rs253555940
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:110007954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gcttgagtt cctaaatttg taatttctag
  atttccctca gtttggattt tctttattgg ttctatttcc actttcagtt cttgaaatgt
  tttatttatt ttcttccact gtttgcttgt gttttcacag atttctttag aggatttctt
  Y
  atttcctttt aaaggaactc tatgatattt aaaaaggtgt tttaatagct gaaataccca
  acacaaggga gatacaacct gtagaaacca cctccagtag ataggcatgg ctccctagtt
  gagggatggg accactcatg catctcaaaa                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321255174	CHEV_4_109823362	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253555940					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:110007954 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14586	CpG island 14586	1762 bp proximal
Gm33070	predicted gene, 33070	1912 bp upstream
Rr84118	regulatory region 84118	1447 bp proximal
Tssr38368	transcription start site region 38368	1896 bp upstream