rs253557176 SNP Detail

Summary

• ID
  rs253557176
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60961550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTAAAAGA AAACTAAAGT
  AGTAAGAGGA TGTTTTGGGG AAAAAAAACA AACAAAAAGA CAGTACTGAT TTGAGATCTG
  TTCTTCTTGG GTATCTATTA TTAAGAACTC AAAATCTCAC AAATAGAGCA GGTAATTAAC
  AAGTCTTTCT TGAAACTGCT ATGGGTTAAA TGCTTACATT CCCCCACAAA ATTTCTGCTG
  R
  TTTTAAACCC TGGAACCAGT TTTATCAGGA GGTAAGAACC CTCAGAGGTT ATAAAGTCAT
  AGAGGAGCCT CCATCATGAG TACAATTGAT CCCCTTACAA AAAAAAGACA GACCTCAGAG
  AATGAGCCTG CTCCTTCTTC GTTCGTCTTC CTCTCCTCCC CCCCCCCCCC CCCCCCCCCC
  CCGAGAGACA GGGTTTCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323327724	CHEV_10_60588519	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253557176					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60961550 () rs orientation: forward

Symbol	Name	Function Class
Gm55864	predicted gene, 55864	536 bp upstream
Rr219927	regulatory region 219927	1851 bp proximal
Sgpl1	sphingosine phosphate lyase 1	within coordinates