rs253571331 SNP Detail

Summary

• ID
  rs253571331
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123151812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGGAGAC AAAGTCTTTT
  ATGTAGCTGG CCTAGAACTC AGAGATCCTC TTGCCCTGCC TCTGTCTCCC AAGCGCTGGG
  ATTAAAGGCT TGTGCCACCA TGCCAGCCCC AAGTTCTCAA TCTTTGTAAA CCTGGGAAGG
  CAGCAGCTAG GGGAATCTCA GAAACTCCAC AGGAGGCCTC TCTTTTGTGC CATGTGGTTG
  R
  GTGAAGGGCT GCCCTCTAGC GGTTGTACAA GAGTTTAACT CTCACACTGT TAGACCTGGA
  GTGCCACACC ACATGCTTAG GATTTATTTG ACTGGGATCT AAATTTATCA TTTGTTCTTG
  TTTTTCCCAC ATGTATTCAG TCAACAAGCA TTTCTTCAAT GTGGAGTATG TGCCAAGAAA
  CATTCTGAAG GCTGGGGGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366530662	MGP_WTSI_5_123463758	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253571331					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366530662	MGP_WTSI_5_123463758	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123151812 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16567	CpG island 16567	764 bp proximal
Gm2479	predicted gene 2479	within coordinates
Gm44574	predicted gene 44574	875 bp upstream
Orai1	ORAI calcium release-activated calcium modulator 1	1325 bp upstream
Rr399336	regulatory region 399336	1034 bp upstream
Rr620045	regulatory region 620045	within coordinates
Rr620046	regulatory region 620046	6 bp proximal
Rr620047	regulatory region 620047	835 bp proximal
Rr620048	regulatory region 620048	1647 bp proximal
Tssr48743	transcription start site region 48743	1261 bp upstream
Tssr48744	transcription start site region 48744	1395 bp upstream
Tssr48745	transcription start site region 48745	1531 bp upstream
Tssr48746	transcription start site region 48746	1563 bp upstream
Tssr53182	transcription start site region 53182	869 bp upstream
Tssr53183	transcription start site region 53183	1091 bp downstream