rs253578784 SNP Detail

Summary

• ID
  rs253578784
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:103978464 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCTCCCCAG GAGACTCTCA AGCAAAGATT
  TGACTCCATC CTGTGGAGAA AATGTATTTC TGAGCTCTAA GTCGTCTGAA GTCTGACAGC
  TTGAGTTCTG GCTGTGACTG AAGCTTCGCT AGCATGCCTG GGACACTCTA ACTGCTCACT
  R
  AATATCTGTC AGGCTCTAAA GGTGTTGTCA CCGCATCTAA AGCTGTTACT GCAGAATGGG
  TGGACGATAT GTTTCCTGTG TCACACTCAG GAATCACACG CTGGCTATTA ACAGCGCAGT
  GCACAAGAAA AACTTGCACA GAATTCACAA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323163288	CHEV_9_104003595	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253578784					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:103978464 () rs orientation: forward

Symbol	Name	Function Class
Acad11	acyl-Coenzyme A dehydrogenase family, member 11	within coordinates
Ackr4	atypical chemokine receptor 4	within coordinates
Gm47000	predicted gene, 47000	within coordinates
Rr686043	regulatory region 686043	990 bp proximal
Rr686044	regulatory region 686044	1543 bp proximal
Rr686045	regulatory region 686045	1744 bp proximal
Tssr2998	transcription start site region 2998	1313 bp downstream
Tssr91231	transcription start site region 91231	1051 bp downstream
Tssr91232	transcription start site region 91232	1077 bp downstream
Tssr91233	transcription start site region 91233	1163 bp downstream
Tssr91234	transcription start site region 91234	1285 bp downstream
Tssr91235	transcription start site region 91235	1736 bp downstream