rs253582605 SNP Detail

Summary

• ID
  rs253582605
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:101029273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGGCACA CCACGGCTCC
  TGCACTCTTG AACTCTCAGT GATTGTGATA TCAGGATAAG ACTGGGCCGG TTAACATTTT
  ATCATGGAGG GGAGGAAGGG ATTAGGAGGC TTCCATCCCT CCTGATGAGG TTAATACAGT
  TAATAGCTGC TGGGGGAGGA AGAGACATTG TCTTTAGTGG TATAGCTGCT AGGATGGATC
  K
  TGTGTTCCTA TGAGCAATCC TAATTAAAAT CATTTGGTCA TCAAAAAAAA AAAAAAAAAA
  AAAAAGACAT GACAACGGAA GAAGGACTTT CTGAGAAGAG ACTGGCAGGA GTTAGAGTGG
  GCAAGGATCA TGGGGGTTGA ATAAGGATCA TATTACATAT ATATATATAT ATATATATAT
  ATATACACAC ACACATACAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321229020	CHEV_4_100844681	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253582605					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101029273 () rs orientation: forward

Symbol	Name	Function Class
Jak1	Janus kinase 1	Intron
Rr596081	regulatory region 596081	685 bp proximal
Tssr42542	transcription start site region 42542	40 bp downstream