rs253584899 SNP Detail

Summary

• ID
  rs253584899
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:24339834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCTCGAA TCCCACCCCT
  AGTCCTGCTG CCCCCTCCAA CCACCGCAGC CCCATCCACT CGGGCCCAGA ACTCCTCCAG
  CACGACCTCT ACAGCAGCCC CAACCACGAC CACCTCCATC ATCAAGCCCA CCACAGCCCA
  AGCCAGCCAC ACTTCTCCCC ATGAAATGGA TCTCGAAGTC ATACAGGAAG AGGGGGCGTC
  R
  TTGAGTGGAG GTGCTGCGGG CCATGGAGGT ACTGCGGGCC ATGGAGGTGC TGCGGGCCAC
  CAAGACCGCA GCAATATGGA GAAGTATCCA GGAAAGGGTG GGGCCCAGAT CCCAGCTAAA
  GGAGGCTCTG GCACTCTAGG GTCCTGGTTG TCTGCAGTTC TGTTGACTGT GGTTGCTGGC
  GCGATGCTGT GAATGTCTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370789687	MGP_WTSI_7_25425428	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253584899					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370789687	MGP_WTSI_7_25425428	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:24339834 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18555	CpG island 18555	1267 bp distal
Cpgi18556	CpG island 18556	111 bp distal
Lypd3	Ly6/Plaur domain containing 3	within coordinates
Rr155455	regulatory region 155455	1967 bp proximal
Rr167239	regulatory region 167239	1433 bp distal
Rr172826	regulatory region 172826	42 bp proximal
Rr172827	regulatory region 172827	1955 bp proximal
Tssr65020	transcription start site region 65020	1626 bp downstream
Tssr65021	transcription start site region 65021	1612 bp downstream
Tssr65022	transcription start site region 65022	192 bp downstream