rs253591056 SNP Detail

Summary

• ID
  rs253591056
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:55476332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAAGGGGA ACAAAGTTAG
  GAAATTACTG ATAATATTGA TACATATACA ATGATACAAA TGTATCAAAA GAAGCCTAAA
  CTAGGGCCCG GCATGGTGGC CCATGCCTTT AATCCCAGCA GTGGCTGTCC TGTAACTCAC
  TCTGTAGACT AGGCTGGCCT CAGACTCAGA AATCCGCCTG CCTCTGCCTC CCAAGTGCTG
  R
  GATTAAAGGC CTGAGCCACC ACTGCCCGGG TGATCTATGA AAATTTTTGG CTCATTCTAG
  TCATACAAAC ACAATGTAGA AAAGGAACAC AATCAAGGTC AGGACCTAAG TTGTGAAAGC
  ATGAACTTCT GCTCCCAGAA GACACATTTG TAGAAGAGCC CAGATTGCCA GCTGACAGTA
  TGTAAGGGAG AAAACTCAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361597520	MGP_WTSI_4_55489204	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253591056					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361597520	MGP_WTSI_4_55489204	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:55476332 () rs orientation: forward

Symbol	Name	Function Class
Gm12510	predicted gene 12510	within coordinates
Rr376520	regulatory region 376520	within coordinates
Rr592486	regulatory region 592486	1801 bp distal
Rr592487	regulatory region 592487	1658 bp proximal
Rr592488	regulatory region 592488	1716 bp proximal
Tssr37333	transcription start site region 37333	1252 bp upstream
Tssr37334	transcription start site region 37334	1394 bp upstream
Tssr37335	transcription start site region 37335	1540 bp upstream
Tssr37336	transcription start site region 37336	1591 bp upstream
Tssr37337	transcription start site region 37337	1854 bp upstream
Tssr41779	transcription start site region 41779	931 bp upstream
Tssr41780	transcription start site region 41780	1050 bp downstream