rs253591480 SNP Detail

Summary

• ID
  rs253591480
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:27033493 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGT GCTTTAGTCA GACGCCTGCG
  Y
  GAGCATGCAC ACGTGCACAC ACACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320220681	CHEV_2_26999001	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253591480					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:27033493 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11367	CpG island 11367	650 bp distal
Dbhos	dopamine beta hydroxylase, opposite strand	1417 bp downstream
Fam163b	family with sequence similarity 163, member B	1004 bp upstream
Rr553477	regulatory region 553477	1001 bp distal
Rr553478	regulatory region 553478	595 bp distal
Tssr23189	transcription start site region 23189	1056 bp upstream
Tssr23190	transcription start site region 23190	1000 bp upstream
Tssr23191	transcription start site region 23191	968 bp upstream
Tssr23192	transcription start site region 23192	925 bp upstream