rs253593399 SNP Detail

Summary

• ID
  rs253593399
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84574018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACATA GGAATGTATT
  TCATTTTCTC CAGGGTCAAA TTTCTTCATA GATTATTTCG GGCTTGTATG CACCGGAAAT
  ATGTCTTCTC AAACTTACTT ACACACTTGT TTTAGGATCT TATTTAATCA CTTATTTTAA
  TATCAGCCTG GGCTTATTAA TAAATATATA ACTAATATGT ATTTAGTTGA TGATAGACTC
  R
  TATTTTTTAT TTATTAAAGA ACTAGAGCAT TCCTTATGCT GAAATTGCAT CCTCGTACTT
  TTAATATTCC TCTCAGATAC AGCTACACTG CTGCTTTGTC CCAACCCAAC CATGTGTACT
  TATAATATCT TACTTACCAC ATTCTTCCTA CATCTGCCAG TTTCTAATGT CGCTCACAGA
  AAGTAGTCTA GGAAATTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325261880	CHEV_16_84777375	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253593399					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84574018 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8384	CpG island 8384	1898 bp distal
Jam2	junction adhesion molecule 2	within coordinates
Rr392068	regulatory region 392068	1051 bp upstream