rs253597647 SNP Detail

Summary

• ID
  rs253597647
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10160727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGCA AGCGCCTGAG AGACCGGAGC
  S
  GTAGACGGTG GCCGGAGACA CGCAC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325720070	CHEV_19_10257853	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253597647					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10160727 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10600	CpG island 10600	within coordinates
Fads1	fatty acid desaturase 1	within coordinates
Gm59251	predicted gene, 59251	within coordinates
Rr362958	regulatory region 362958	within coordinates
Tssr155024	transcription start site region 155024	484 bp downstream
Tssr155025	transcription start site region 155025	467 bp downstream
Tssr155026	transcription start site region 155026	446 bp downstream
Tssr155027	transcription start site region 155027	394 bp downstream
Tssr155028	transcription start site region 155028	358 bp downstream
Tssr155029	transcription start site region 155029	327 bp downstream
Tssr155030	transcription start site region 155030	315 bp downstream
Tssr155031	transcription start site region 155031	207 bp downstream
Tssr155032	transcription start site region 155032	159 bp upstream
Tssr158164	transcription start site region 158164	93 bp downstream