rs253605541 SNP Detail

Summary

• ID
  rs253605541
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:65019530 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTCTCTTG GAATAACACT
  TTCCAAGTGT GTTGTCTTGA CTAACAAGTA CCAGAGCTCA CACTCTGAAA CAAACTGACA
  TTCTGTGTAA TATGGCAACA AAGCCTTTCA TCCCAGGAAA GGAAGTCCCA GCAAATGCAA
  ATATCATCAC TTATATTTTA AAAGTAACAA ATGTTGCACT GATTCTAGTT TTTGGACCCA
  S
  TCTTTCTTTT AGATCTCTTA TCAATGTTTG CTCAAAAAAA AAGATACAAA CTAAATTACT
  CCTACAGGAG CAATACTCTA TTCCTTAAAA CAATCTATAC TAAACCTTGT ATCTGCCAAA
  GAAACAAGGT CCTGTCAAGA ATTCAGAAAT TTCCATCTAT TCTCAAAGGT TATGATTAAG
  TATTTCAAAT AGAAAACTAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371680314	MGP_WTSI_7_72514668	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253605541					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371680314	MGP_WTSI_7_72514668	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:65019530 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19209	CpG island 19209	581 bp proximal
Gm57226	predicted gene, 57226	1521 bp upstream
Rr647944	regulatory region 647944	308 bp distal
Rr647945	regulatory region 647945	541 bp proximal
Rr647946	regulatory region 647946	1223 bp proximal
Rr647947	regulatory region 647947	1532 bp proximal
Tjp1	tight junction protein 1	Intron
Tssr67032	transcription start site region 67032	1640 bp upstream
Tssr72804	transcription start site region 72804	1092 bp downstream
Tssr72805	transcription start site region 72805	1107 bp downstream
Tssr72806	transcription start site region 72806	1126 bp downstream
Tssr72807	transcription start site region 72807	1428 bp downstream