rs253610669 SNP Detail

Summary

• ID
  rs253610669
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:87843316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCCC AAGCCAATTT ACTGGGGGAG
  K
  TACACTATTA CATTCGAGTA TACTC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss917545966	MGP_WTSI_5_87695457	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253610669					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917545966	MGP_WTSI_5_87695457	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:87843316 () rs orientation: forward

Symbol	Name	Function Class
Csn2	casein beta	within coordinates
D5Mit12	DNA segment, Chr 5, Massachusetts Institute of Technology 12	1479 bp distal
D5Mit16	DNA segment, Chr 5, Massachusetts Institute of Technology 16	1439 bp distal
D5Mit16.1	DNA segment, Chr 5, Massachusetts Institute of Technology 16.1	1282 bp distal
D5Mit16.2	DNA segment, Chr 5, Massachusetts Institute of Technology 16.2	1594 bp distal
Tssr1529	transcription start site region 1529	896 bp downstream
Tssr46883	transcription start site region 46883	946 bp downstream
Tssr46884	transcription start site region 46884	931 bp downstream
Tssr46885	transcription start site region 46885	910 bp downstream
Tssr46886	transcription start site region 46886	880 bp downstream
Tssr46887	transcription start site region 46887	863 bp downstream
Tssr46888	transcription start site region 46888	757 bp downstream
Tssr46889	transcription start site region 46889	738 bp downstream
Tssr46890	transcription start site region 46890	705 bp downstream
Tssr46891	transcription start site region 46891	692 bp downstream
Tssr46892	transcription start site region 46892	663 bp downstream
Tssr46893	transcription start site region 46893	637 bp downstream
Tssr46894	transcription start site region 46894	592 bp downstream
Tssr46895	transcription start site region 46895	572 bp downstream
Tssr46896	transcription start site region 46896	493 bp downstream
Tssr51618	transcription start site region 51618	917 bp upstream
Tssr51619	transcription start site region 51619	883 bp upstream
Tssr51620	transcription start site region 51620	873 bp upstream
Tssr51621	transcription start site region 51621	854 bp upstream
Tssr51622	transcription start site region 51622	818 bp upstream
Tssr51623	transcription start site region 51623	802 bp upstream
Tssr51624	transcription start site region 51624	785 bp upstream
Tssr51625	transcription start site region 51625	775 bp upstream
Tssr51626	transcription start site region 51626	763 bp upstream
Tssr51627	transcription start site region 51627	737 bp upstream
Tssr51628	transcription start site region 51628	627 bp upstream
Tssr51629	transcription start site region 51629	533 bp upstream
Tssr51630	transcription start site region 51630	485 bp upstream
Tssr51631	transcription start site region 51631	446 bp upstream
Tssr51632	transcription start site region 51632	187 bp upstream
Tssr51633	transcription start site region 51633	596 bp downstream
Tssr51634	transcription start site region 51634	718 bp downstream
Tssr51635	transcription start site region 51635	1682 bp downstream
Tssr51636	transcription start site region 51636	1708 bp downstream
Tssr51637	transcription start site region 51637	1821 bp downstream