rs253614514 SNP Detail

Summary

• ID
  rs253614514
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:76372997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATTGCTCT AGAAACCAAG
  CCTTGGAGGG CTGTGTAAAC GGAGGAGTTA TGAGCTCAAA GTCTGACACT TTGGAGAGAT
  GGTTTAACTC AAGAAACACA CACACACACA CACACACACA CACACACACA CACACACACA
  TATATATATA TATATTTGGA ATCTACCCAG CCTTGCTTCC CCCTCCCCAC ACCAACTCCT
  Y
  GTGTGGACAC CCAAATCCAC ATATGAACCA CACAATGCTT TTTAAAAAAT GTTTAAGATC
  ACTTTTAACA GGGCATTCTG TATTAAAGCT GTTGATTTCT ATCAGTATAA AGAAGGGTTG
  TAAGTCAGAA CCAGTTTTCC TCCTTCCAAT CTGAGCACCA TTTGTCTTAA CTACATTCCC
  AGGTGGCTCT GGAAGGCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325699769	CHEV_18_76399580	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253614514					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:76372997 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10251	CpG island 10251	911 bp proximal
Rr540992	regulatory region 540992	1164 bp proximal
Rr540993	regulatory region 540993	1786 bp proximal
Smad2	SMAD family member 2	1654 bp upstream
Tssr151989	transcription start site region 151989	1377 bp upstream
Tssr151990	transcription start site region 151990	1406 bp upstream
Tssr151991	transcription start site region 151991	1494 bp upstream
Tssr151992	transcription start site region 151992	1734 bp upstream
Tssr151993	transcription start site region 151993	1966 bp upstream