rs253621958 SNP Detail

Summary

• ID
  rs253621958
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129146876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATGACAA ACTTCTGCCT
  GACGAGCTTC ATCAGTTTGT ATCTCAAATC ACTCTGGTAG GTGTAAGGTG CTGATCTGGG
  TTGGATGGTC TCTAAAATCA TTACCAGAAG TTCAGGTTAC CGCCTAGTTA CAAACCTAGA
  TGACATACAC ATGCCAGTAC AAGCATAAGA CATGCTCTGA GAAGGACTGG AGGGTAGCTA
  W
  TCCAAGTGGA ACACCAGAGT TGAAACTAGA CACCAGAAGG CTTGATCCTA CCTGGGGTTG
  TACTATTGGT TTTTCTTTTG TAAATCAATT CATCATGTAG TATTTTTATT TTACTTTTTA
  AAAGAAAGTT TTTGAGAAAT GTTAACATTT TTGTTAGCCA TTTTTGTTTC TTTCTTCCTT
  TTTATTTTTT CCTACAGGGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355636775	MGP_WTSI_2_129130692	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253621958					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355636775	MGP_WTSI_2_129130692	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129146876 () rs orientation: forward

Symbol	Name	Function Class
Gm14023	predicted gene 14023	within coordinates
Il1a	interleukin 1 alpha	within coordinates
Tssr26214	transcription start site region 26214	1985 bp upstream
Tssr26215	transcription start site region 26215	1966 bp upstream
Tssr26216	transcription start site region 26216	1171 bp upstream
Tssr26217	transcription start site region 26217	1149 bp upstream
Tssr26218	transcription start site region 26218	229 bp upstream
Tssr26219	transcription start site region 26219	180 bp upstream
Tssr26220	transcription start site region 26220	148 bp upstream
Tssr26221	transcription start site region 26221	101 bp upstream
Tssr26222	transcription start site region 26222	932 bp downstream
Tssr26223	transcription start site region 26223	957 bp downstream
Tssr26224	transcription start site region 26224	1209 bp downstream
Tssr26225	transcription start site region 26225	1502 bp downstream
Tssr26226	transcription start site region 26226	1545 bp downstream
Tssr26227	transcription start site region 26227	1582 bp downstream
Tssr26228	transcription start site region 26228	1605 bp downstream
Tssr26229	transcription start site region 26229	1639 bp downstream
Tssr26230	transcription start site region 26230	1682 bp downstream
Tssr26231	transcription start site region 26231	1707 bp downstream
Tssr26232	transcription start site region 26232	1836 bp downstream