rs253623166 SNP Detail

Summary

• ID
  rs253623166
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163443159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTAGTAAT TTGTTATAAA
  TGGAACAGGA AACTAACACT TAGATTTGGG CGGGGGGGGG GCGCGGACGG GGGACAGGAC
  ACCTATTTAA ATGTGAGTTT CTGAGAAACA AACATTTCTA AAGTATGTGT CCCAAATGTT
  ACATAAGGAA CCTAGTCTTA AAAATAGACC TTTGTTTATC TGAAATTCAA ATTTAACTGA
  R
  AGTTCTATAT TTTATTTGGC AGCCTAGAAG CTGGTGACTG GAGAGAAGGG AGGACTGCAA
  GTCTCATGAC TTGTAACCTG GGGTGGCGGC ACACACTCAC TGTCTCAGAA GACAAGGCGC
  AAGAGTCATG AGTTGGGGGC CAGCTGGTCT ACAAAGGCAC CCTCTATTAA AAACAAACAA
  AACAGATAAA CATAACTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356411343	MGP_WTSI_2_163426975	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253623166					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356411343	MGP_WTSI_2_163426975	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163443159 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12638	CpG island 12638	759 bp proximal
Rr397464	regulatory region 397464	1300 bp upstream
Rr569431	regulatory region 569431	1532 bp distal
Rr569432	regulatory region 569432	1789 bp distal
Rr569433	regulatory region 569433	within coordinates
Rr569434	regulatory region 569434	585 bp proximal
Rr569435	regulatory region 569435	773 bp proximal
Rr569436	regulatory region 569436	969 bp proximal
Rr569437	regulatory region 569437	1094 bp proximal
Tssr21475	transcription start site region 21475	1055 bp upstream
Tssr21476	transcription start site region 21476	1092 bp upstream
Ttpal	tocopherol (alpha) transfer protein-like	1075 bp upstream