rs253623935 SNP Detail

Summary

• ID
  rs253623935
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:87844374 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTAAATT ATTTAAAACA
  CATTGTATAA GCCTACTGTT TACAAGAAAA GTGAGTGCAG TCCAGAGAGA AAAAGAAATT
  AGTGAGCAGA GTATACAAAG AGACATCTAA ACAATGCTAA TTCTTTCTCT GTCTACAGGT
  GAACTTTAAA TTCCATTCTT AAATCAAAAC ACACAAACAT AATGGAAAAT ACAGACTAAT
  R
  GCAATATATT ACAGTAGTCA CTATGAGTTT GCTTGCTACT ATGCTAGGCT TCAAATAAGC
  CATGAGAAAT GAATACTTCC TCTGAGGTAT TTGCAGCATT GTGACGAGAA AATAATAGAC
  ACATGATAAG TATTTCATGG TAAAGAGATG GTAAGTATTT CATGTGATAC TCTCAGGTAA
  ATTTAAGATT TCATTGTATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365777322	MGP_WTSI_5_88125540	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253623935					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365777322	MGP_WTSI_5_88125540	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:87844374 () rs orientation: forward

Symbol	Name	Function Class
Csn2	casein beta	within coordinates
Tssr1529	transcription start site region 1529	1954 bp downstream
Tssr46884	transcription start site region 46884	1989 bp downstream
Tssr46885	transcription start site region 46885	1968 bp downstream
Tssr46886	transcription start site region 46886	1938 bp downstream
Tssr46887	transcription start site region 46887	1921 bp downstream
Tssr46888	transcription start site region 46888	1815 bp downstream
Tssr46889	transcription start site region 46889	1796 bp downstream
Tssr46890	transcription start site region 46890	1763 bp downstream
Tssr46891	transcription start site region 46891	1750 bp downstream
Tssr46892	transcription start site region 46892	1721 bp downstream
Tssr46893	transcription start site region 46893	1695 bp downstream
Tssr46894	transcription start site region 46894	1650 bp downstream
Tssr46895	transcription start site region 46895	1630 bp downstream
Tssr46896	transcription start site region 46896	1551 bp downstream
Tssr51618	transcription start site region 51618	1975 bp upstream
Tssr51619	transcription start site region 51619	1941 bp upstream
Tssr51620	transcription start site region 51620	1931 bp upstream
Tssr51621	transcription start site region 51621	1912 bp upstream
Tssr51622	transcription start site region 51622	1876 bp upstream
Tssr51623	transcription start site region 51623	1860 bp upstream
Tssr51624	transcription start site region 51624	1843 bp upstream
Tssr51625	transcription start site region 51625	1833 bp upstream
Tssr51626	transcription start site region 51626	1821 bp upstream
Tssr51627	transcription start site region 51627	1795 bp upstream
Tssr51628	transcription start site region 51628	1685 bp upstream
Tssr51629	transcription start site region 51629	1591 bp upstream
Tssr51630	transcription start site region 51630	1543 bp upstream
Tssr51631	transcription start site region 51631	1504 bp upstream
Tssr51632	transcription start site region 51632	1245 bp upstream
Tssr51633	transcription start site region 51633	441 bp upstream
Tssr51634	transcription start site region 51634	336 bp upstream
Tssr51635	transcription start site region 51635	624 bp downstream
Tssr51636	transcription start site region 51636	650 bp downstream
Tssr51637	transcription start site region 51637	763 bp downstream
Tssr51638	transcription start site region 51638	1539 bp downstream
Tssr51639	transcription start site region 51639	1546 bp downstream