rs253626261 SNP Detail

Summary

• ID
  rs253626261
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:74209188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCGCTGCGG GCTCGCTAGG
  ACTGCCATCA ACTCTTTCCC ATTCTGGGAG CCTCCTGGGC GTCCCCCTCC CTCCCTCCTC
  TGGAGGGGTG AGGTGGGCTT CCAGCCTCCT GCTCTTCACG CGGCCCGTTT AATGGGCAGG
  TAATTTTCTC GGTGAGTGAT TTCATGGAAG CCCTTCCTAA TTATTCATCG CTCCGTCTGC
  Y
  GGAGCTGCAC AAGAGCTTTT CTAGAAAAAA AAAATGATCT TCCAGGACCC CGGGCACAGC
  CTCATTACCT GTTAAAATCA CCACACACAC ACACACACAC ACACACACAC ACACACACAC
  ACACACATAC ACACACACAC ACACACACAC ACAGAGTTCA CCTTTTACCA GAAAGAAGCT
  GGCCAACAGG GAGAGCAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss396852693	MGP_WTSI_16_74412545	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253626261					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss396852693	MGP_WTSI_16_74412545	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:74209188 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8368	CpG island 8368	75 bp distal
Robo2	roundabout guidance receptor 2	within coordinates
Rr319102	regulatory region 319102	1013 bp proximal
Rr325467	regulatory region 325467	within coordinates
Tssr141737	transcription start site region 141737	870 bp upstream
Tssr141738	transcription start site region 141738	849 bp upstream
Tssr141739	transcription start site region 141739	757 bp upstream
Tssr141740	transcription start site region 141740	672 bp upstream
Tssr141741	transcription start site region 141741	569 bp upstream
Tssr141742	transcription start site region 141742	508 bp upstream
Tssr141743	transcription start site region 141743	494 bp upstream
Tssr141744	transcription start site region 141744	468 bp upstream
Tssr141745	transcription start site region 141745	420 bp upstream
Tssr141746	transcription start site region 141746	169 bp upstream