rs253628572 SNP Detail

Summary

• ID
  rs253628572
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:148781163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTACTGTTT CCGCCTCTGT TTTTGAAAAT
  CCCCAAACAT CCTTTTTTAA TCGAGACGAA AACAAGGTAT GTCACTGATG AAAGCGGCAT
  ACATATTTTC GTGCTTATTA TTTACAGAAA GAGGAAACAT CTGAACTCTG TTTGCTAACT
  R
  CAGTGTGATG GGAGCGAGCC TGCAGGCGGT GTGCAGTCCC TGTCTGCTTG CCAGCTCTGC
  TTAGTCCCAG CGTATTAATG AACAAGTGCA AGTATTTGAA GAATCAGCAT TTCCGCATTT
  GCATGCAAAC TCTCATGCTG GGTAATTATA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321017230	CHEV_3_148738491	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253628572					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148781163 () rs orientation: forward

Symbol	Name	Function Class
Rr587252	regulatory region 587252	within coordinates
Rr587253	regulatory region 587253	1534 bp proximal
Tssr36091	transcription start site region 36091	1562 bp downstream
Tssr36092	transcription start site region 36092	1587 bp downstream
Tssr36093	transcription start site region 36093	1624 bp downstream
Tssr36094	transcription start site region 36094	1652 bp downstream
Tssr36095	transcription start site region 36095	1709 bp downstream
Tssr36096	transcription start site region 36096	1814 bp downstream