rs253637566 SNP Detail

Summary

• ID
  rs253637566
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30123146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCATGTGCG CTGGGGGAGA
  TGGGAGTTGT AGTCCTGACT CTGAGGCTCT GCAGGTGGGG GACAGACCTG GAAGAATCTT
  CCAGATTCAT AAATTCATTT CCTTTACATT GCAGGGACAC TTCTCCCCTC CTCTGGTCCA
  GCCACTGACT CCATCTGTGA ATGAGGCAGA GCCAGGTAAG AATAAAGTTA GCTCCTAGCC
  Y
  AGCTTCTCTT AGACTCAGGC ATCCCAGCTC TTAGACCTTT GGGGACCGAG GAGTCAGGCA
  GCTCTCATTA TTCTTGAGCC ATATGGGAAA TTTTGATGAC CAGCCTGCCA TCGTTGCACA
  TGTCTATATT CCCAGTACTC CGGAGTTGAG GGGGGGCGGA TTGCCATTGG GTTTGAGGTC
  ATGTGGTTTT TTTTTTTTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370906893	MGP_WTSI_7_31208740	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253637566					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370906893	MGP_WTSI_7_31208740	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30123146 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18799	CpG island 18799	913 bp distal
Cpgi18800	CpG island 18800	189 bp distal
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	within coordinates
Rr400239	regulatory region 400239	1867 bp downstream
Rr400240	regulatory region 400240	1288 bp downstream
Rr644814	regulatory region 644814	1979 bp distal
Rr644815	regulatory region 644815	1305 bp distal
Rr644816	regulatory region 644816	436 bp distal
Tssr2184	transcription start site region 2184	373 bp downstream
Tssr65714	transcription start site region 65714	1979 bp downstream
Tssr65715	transcription start site region 65715	1426 bp downstream
Tssr65716	transcription start site region 65716	1290 bp downstream
Tssr65717	transcription start site region 65717	1277 bp downstream
Tssr65718	transcription start site region 65718	1251 bp downstream
Tssr65719	transcription start site region 65719	428 bp downstream
Tssr65720	transcription start site region 65720	407 bp downstream
Tssr65721	transcription start site region 65721	350 bp downstream
Tssr65722	transcription start site region 65722	313 bp downstream
Tssr65723	transcription start site region 65723	298 bp downstream
Tssr65724	transcription start site region 65724	244 bp downstream
Tssr65725	transcription start site region 65725	116 bp downstream
Tssr65726	transcription start site region 65726	111 bp downstream
Tssr65727	transcription start site region 65727	77 bp downstream
Tssr65728	transcription start site region 65728	199 bp upstream
Tssr65729	transcription start site region 65729	517 bp upstream
Tssr65730	transcription start site region 65730	565 bp upstream
Tssr65731	transcription start site region 65731	591 bp upstream
Tssr65732	transcription start site region 65732	629 bp upstream
Tssr65733	transcription start site region 65733	657 bp upstream
Tssr65734	transcription start site region 65734	698 bp upstream
Tssr65735	transcription start site region 65735	1497 bp upstream
Tssr65736	transcription start site region 65736	1516 bp upstream
Tssr65737	transcription start site region 65737	1550 bp upstream
Tssr65738	transcription start site region 65738	1606 bp upstream
Tssr65739	transcription start site region 65739	1802 bp upstream
Tssr65740	transcription start site region 65740	1829 bp upstream
Tssr65741	transcription start site region 65741	1982 bp upstream
Tssr65742	transcription start site region 65742	1999 bp upstream
Tssr71746	transcription start site region 71746	1676 bp downstream