rs253640523 SNP Detail

Summary

• ID
  rs253640523
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:17093370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTTATTT TTATTTATAT
  GAGTACATTG TCACTGTCTT GAGGGCATCA GATCCCATTA CAAATGGTTG TGAGCCACTA
  TGTGATTTCT GGGAATTGAA CTTATGACCT CTAGAAGAGC AGTCAATACT CTTAACCGCT
  GAGCCATGTC TTCAGTCCTT CTTTAAAAAA AAAAAAAAAA AAAAAGATTA CACACACACA
  Y
  ACACACACAC TCACACACTA TAGCTGTCTT CAGACACACC GGAAGAGGGT ATCAGATCCC
  ATTATAGATG GTTGTGGATC ACCATGTGGT TGCTGGAAAT TGAACTCAGA ACCTCTGGAA
  GAGCAGTCAG TGCTCTTAAC CATTGAGCCA TCTCTCAAAC CCTCTCATTT TTTCTTTCTT
  TTTTTCTTTG GTTTTTGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395516003	MGP_WTSI_16_17275599	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253640523					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395516003	MGP_WTSI_16_17275599	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:17093370 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8012	CpG island 8012	581 bp proximal
Gm49573	predicted gene, 49573	within coordinates
Rr316836	regulatory region 316836	431 bp proximal
Rr322884	regulatory region 322884	1828 bp distal
Rr324991	regulatory region 324991	430 bp proximal
Rr370056	regulatory region 370056	555 bp upstream
Tmem191	transmembrane protein 191	794 bp upstream
Tssr137285	transcription start site region 137285	785 bp upstream
Tssr137286	transcription start site region 137286	831 bp upstream
Tssr137287	transcription start site region 137287	1156 bp upstream