rs253640962 SNP Detail

Summary

• ID
  rs253640962
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84571970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGCCCAA GAAAGATGGC
  ATCCGGGGTT GGCGAAGGCC ACTCTTAAGT AGCTGCGGCT GAGGGATCAG TGGTTACGGT
  CCCAGCTGCC CCGGGCAAGG TGCTGGGTAA AGCACTTTAG AGGCGGTAGC GGGGTGAAAT
  TAGCTGAGCC CCAGTAGCTT TTCGCCTTTA CGCCTGCAAA ACCGGCTTAG AGAAGTCTGT
  S
  CGCTCCAGCC AGCTGCCGTG TCCTCAGGGG ATGTCCAGCC AGCGGGACTG GCTGTTAGGA
  TTGTTAGAAA GGCGCAGGCG ATGAATGAGC GAGCTGGCAG CTGGCATAGC TGCGGAGGCG
  TCCCAAAGCC AGTTTAGTTT CTCTGGGTAC TTTGAAAGAG GATTTGCGCG GGTGCTGGCC
  TAATGTGATT TGAAATTTGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397140853	MGP_WTSI_16_84775327	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253640962					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397140853	MGP_WTSI_16_84775327	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84571970 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8384	CpG island 8384	within coordinates
Jam2	junction adhesion molecule 2	within coordinates
Tssr139178	transcription start site region 139178	1427 bp downstream
Tssr139179	transcription start site region 139179	1207 bp downstream
Tssr139180	transcription start site region 139180	1178 bp downstream
Tssr139181	transcription start site region 139181	989 bp downstream
Tssr139182	transcription start site region 139182	937 bp downstream
Tssr139183	transcription start site region 139183	908 bp downstream
Tssr139184	transcription start site region 139184	885 bp downstream
Tssr139185	transcription start site region 139185	844 bp downstream
Tssr139186	transcription start site region 139186	788 bp downstream
Tssr139187	transcription start site region 139187	768 bp downstream
Tssr139188	transcription start site region 139188	750 bp downstream
Tssr139189	transcription start site region 139189	659 bp downstream
Tssr139190	transcription start site region 139190	643 bp downstream