rs253646229 SNP Detail

Summary

• ID
  rs253646229
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45568706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGATGCAG AACATTCCTT
  CTGTGGATCC TTTAGCTGCC CCCATCCCTG GAACCCAGCT CATTTACCAC CACTGACTTC
  TCAAGCACTG GCTCACCGCA GAGCCTCTAA GGCACACAGC TCCACTCTCC CTCTCCTGTG
  GGGGCCATGG AGGCTGCTCT CAGGAGAGGG CTGGGAGCCT CCAGTGGCCC GCTCCCATTC
  Y
  TCGCCACCGT TCCCCAAGCT GGGGGAAGTG CTTACTGGTG CAAAGCTGGC AGAGGCCGGT
  AGCGTAGAAG AGCCCTCCGC GCCGCATGGT GTAGAGTTGG AACATGAAGA GGATGAAGGA
  CAGGCAGCAG AGGATGAGAG ACAGCACCAT GAGGGCCTGC ACTGCCTTCA GCCAGCCTAC
  AGGGGGCGAC ACAGGTGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371187815	MGP_WTSI_7_53174652	EVA_MGPV3	EVA_MGPV3	f	SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253646229					SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371187815	MGP_WTSI_7_53174652	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45568706 () rs orientation: forward

Symbol	Name	Function Class
Emp3	epithelial membrane protein 3	Intron
Gm72819	predicted gene, 72819	743 bp downstream
Rr400324	regulatory region 400324	1908 bp upstream
Rr646606	regulatory region 646606	1775 bp distal
Rr646607	regulatory region 646607	1294 bp distal
Rr646608	regulatory region 646608	172 bp proximal
Rr646609	regulatory region 646609	1559 bp proximal
Tmem143	transmembrane protein 143	1869 bp downstream
Tssr2256	transcription start site region 2256	1706 bp downstream
Tssr66660	transcription start site region 66660	1229 bp downstream
Tssr72489	transcription start site region 72489	64 bp downstream
Tssr72490	transcription start site region 72490	874 bp downstream
Tssr72491	transcription start site region 72491	1106 bp downstream
Tssr72492	transcription start site region 72492	1345 bp downstream
Tssr72493	transcription start site region 72493	1369 bp downstream
Tssr72494	transcription start site region 72494	1393 bp downstream
Tssr72495	transcription start site region 72495	1399 bp downstream
Tssr72496	transcription start site region 72496	1418 bp downstream
Tssr72497	transcription start site region 72497	1548 bp downstream
Tssr72498	transcription start site region 72498	1829 bp downstream
Tssr72499	transcription start site region 72499	1979 bp downstream