rs253654806 SNP Detail

Summary

• ID
  rs253654806
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:32487729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACCATACGC CAACCTTGGA CTTCCTCCCA
  CCAGATCTAG CTCATCCCCC AGGACTTGGC CATCATCACA TGACCTCAAA AGATCCAGAT
  GGGACTTCTA CTGCAATTCC TCCTGACCAA GAATGCCTTT AGACCTGGAT GCCTAGTACT
  R
  GAGCTACATT GTGGGGAGAC ATGGGGGTGG GCAGGGAGGG AACTTCTGTC TTGGGGTTGC
  CTTACCACTG GCATTTGAAG TTTAAATAAG GAAATTGTGT ACTCAAAGGG CTTACAAGGA
  GTGAGGGCTT GCAATGTGTA CCTATTTCAC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321778407	CHEV_6_32460794	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253654806					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:32487729 () rs orientation: forward

Symbol	Name	Function Class
Plxna4	plexin A4	within coordinates
Plxna4os1	plexin A4, opposite strand 1	347 bp upstream
Rr628119	regulatory region 628119	within coordinates
Rr628120	regulatory region 628120	290 bp proximal
Rr628121	regulatory region 628121	1256 bp proximal
Tssr55474	transcription start site region 55474	324 bp upstream
Tssr55475	transcription start site region 55475	385 bp upstream