rs253659787 SNP Detail

Summary

• ID
  rs253659787
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:58421871 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGCCCCGA ACGGGCGGCC
  GCACCTGCTG TCACTCCCGC GGCCGGCCGC GGCGGACCAG GCCTGCGGCC CGCACTCCCC
  CGCAGCCTCC GCGGCCCTCC CGCCGCCCGG CCCCGCTCGG CTCAGCCCCG CTCGGCTCCG
  CTCCGCTCCG CTCCCCGCCT CAGGCCGCAC TCGGCCGCGT CCCCTCAGCC ACGAGCTGCG
  R
  GGCTCCGTAG ACTCACCGGG CCTCCCTCGC CGCGGTGCGG CCGCTCCCGT CTCCCCGCCG
  CTCCCGCGCT ACCCCCGGGC GTTGGGCGCG GGCCGCGGGG CGTCCGCAGT AACGGGCCCG
  CGGAGGGCGG CGGCGCGCGG AGGGCGGGGC GGGGCGGGGC GGGGCGGACC CGCAAGCCTG
  GCGCCCGCCG TGGCCGGCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss388759161	MGP_WTSI_13_58375418	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	G	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs253659787					SNP	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	G	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388759161	MGP_WTSI_13_58375418	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:58421871 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5724	CpG island 5724	within coordinates
Gkap1	G kinase anchoring protein 1	within coordinates
Rr481008	regulatory region 481008	within coordinates
Rr481009	regulatory region 481009	121 bp proximal
Tssr120072	transcription start site region 120072	195 bp upstream
Tssr122823	transcription start site region 122823	39 bp downstream
Tssr122824	transcription start site region 122824	64 bp downstream
Tssr122825	transcription start site region 122825	206 bp downstream
Tssr122826	transcription start site region 122826	283 bp downstream
Tssr122827	transcription start site region 122827	310 bp downstream
Tssr122828	transcription start site region 122828	404 bp downstream
Tssr122829	transcription start site region 122829	447 bp downstream
Tssr122830	transcription start site region 122830	776 bp downstream
Tssr122831	transcription start site region 122831	1590 bp downstream
Tssr122832	transcription start site region 122832	1643 bp downstream