rs253662607 SNP Detail

Summary

• ID
  rs253662607
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107649859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGATGGGT AAGCAATGAA
  CACTCAGAAA ATGGAGCAAG AAATGAATAC TAAATGTAAT GGTTCTTCCT GGGTGTCAAC
  TTGACTACAT CTGAAATGAA CTACAATCCA GAATTGGAGG GCTCACCTGT GATCCGGAAG
  ACACAAGTTT CTGACCTGGA TCTTGGCATG GAGATCTTGA GGCACAGTAG CCATGGAAGG
  Y
  TTAGGCCCAG GTGAGGGTAC ACACCTTTAA TCCCAGGAGA CTAAGGCAAG GGGATCTCTG
  AGTTCAAGGT CAGGCTGGGA CAAAGCAAGT CCCAGATCCA GACGTGGTGG TACACACCTT
  TAATCTGGGC CACACCTTCT GCTGGAGACC TACATAAGGA CATTGGAGGA AAGAAGATTC
  GCTCTTCTTT GCCTGCTTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321251333	CHEV_4_107465267	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253662607					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107649859 () rs orientation: forward

Symbol	Name	Function Class
Gm69341	predicted gene, 69341	within coordinates
Lrp8os3	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor, opposite strand 3	487 bp downstream