rs253665112 SNP Detail

Summary

• ID
  rs253665112
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40345757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGGTACC AAGAACATCT
  TCTTGCCTAA TTATGCCCCA GATCAAAGAA TATCACTTAA CTTAAACTCA AAGTTCTGCC
  CTCCATTCAT CCTCCACAAA ACCTGATGCC CACACTGCTT ATGCTAACAC CAAACACAAA
  GCCATGTTAC AGAAAATCAA AGTCCAGGCT GGATATGTAT AACATCACCA CGGCTGGTCA
  M
  TTACCATCCC CCCACCCCAC CCCCACCCCC CACCCCCAAT TAGGAAGGGG ATCAGGTTCA
  GGGAGTATAC CAGGATGTAC ATCACCCCAC CCTATCCCCA CAACAATATA GGCTGAGCAT
  ACACACAGTA CTACCCACCC GCTAGACCAC TGTCGGTTCC AGGTTGGCCA ACCTCAAATG
  GCTCAAGAAG GAAGCCTCTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322916123	CHEV_9_40242046	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253665112					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40345757 () rs orientation: forward

Symbol	Name	Function Class
Gm51668	predicted gene, 51668	within coordinates
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676831	regulatory region 676831	708 bp distal
Tssr88924	transcription start site region 88924	568 bp downstream
Tssr88925	transcription start site region 88925	640 bp downstream
Tssr88926	transcription start site region 88926	684 bp downstream
Tssr88927	transcription start site region 88927	695 bp downstream
Tssr88928	transcription start site region 88928	772 bp downstream