rs253669521 SNP Detail

Summary

• ID
  rs253669521
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:24966677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCGATGCC CCGACTCTCC
  GCCGCCGCCT CGGCCTCCTC CTGCGCCGGG GGCTCGGAGC TGTGGAGCTG CGGTGCGATG
  TCCGCAAAGT TCCGGGAGGC AGCGGTCGCC TACTCCCCGC CGTCCCGCCG CGGCGCCTTT
  TGTGCGAGGT GTGAGCGCTT CCCTGGCAGG CGAGCGCATC CTGGGCGGGC GGGCGGGCGG
  K
  CGGTCGGTCG GACGGGCTGG CTGGTGGCGC GGAGCGCGGC TCTCTCCGGA CCCCGCGGCA
  GGAAGCGGCT GACTCGGCAG CCGGCAACCC GGAGAGGCTC CCGGCGCGGC CGCGGCTTCC
  CGGGGCCACG CGATGTCCTG CGCTGCTTCG GGCCTCCTTG ATCCCCGGTG CTCCAGCCGG
  GGCTCCGCCG AGCAGACCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360908070	MGP_WTSI_4_24893824	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253669521					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360908070	MGP_WTSI_4_24893824	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:24966677 () rs orientation: forward

Symbol	Name	Function Class
C230012O17Rik	RIKEN cDNA C230012O17 gene	within coordinates
Cpgi14091	CpG island 14091	within coordinates
Gm11906	predicted gene 11906	within coordinates
Gpr63	G protein-coupled receptor 63	within coordinates
Rr734	regulatory region 734	within coordinates
Rr589685	regulatory region 589685	150 bp distal
Rr589686	regulatory region 589686	within coordinates
Tssr36642	transcription start site region 36642	175 bp downstream