rs253670192 SNP Detail

Summary

• ID
  rs253670192
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:49339707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCATGTAT GTCTGGTACC
  CACAGAAGCC AGAAGAGGAT GTAAGACGCC TTGGAAGAGG AGTGAGAGAC GGTCAAGAGC
  TGCAAGCAGC CGGTACTCTT AACTACTAAG CCATCTCTTC TGCCCAGGTA TCTTTTTTGT
  TTTTGGGACA GCGTTTCTCT ATGTAGCTCT GGCTGTTCTG GAACTTGCTC TGTAGACCAG
  R
  CTGGCCTCGA ACTCAGACAT ACACCTGTCT CTGCCTCCAA GTGCTGGGAT TAAAGGCTTG
  TGCCACCACC TCTACCACCA GGCTGGCTCC ATTTCTTATT TCTAATCCTC TTCCTTCTGG
  ATGTGAGACA GGGGACAGAG GGTCCGCAGG TTCACTTGGC CTTTAGCAAA CTCCAGCCTT
  ATGCTAAGAC ACAAGCTGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388559499	MGP_WTSI_13_49281600	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253670192					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388559499	MGP_WTSI_13_49281600	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:49339707 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5580	CpG island 5580	588 bp proximal
Ninj1	ninjurin 1	1298 bp upstream
Rr479364	regulatory region 479364	764 bp proximal
Rr479365	regulatory region 479365	1305 bp proximal
Tssr119678	transcription start site region 119678	1254 bp upstream
Tssr119679	transcription start site region 119679	1925 bp upstream
Tssr119680	transcription start site region 119680	1971 bp upstream
Tssr122445	transcription start site region 122445	1682 bp downstream
Tssr122446	transcription start site region 122446	1707 bp downstream
Tssr122447	transcription start site region 122447	1722 bp downstream
Tssr122448	transcription start site region 122448	1766 bp downstream
Tssr122449	transcription start site region 122449	1782 bp downstream