rs253670546 SNP Detail

Summary

• ID
  rs253670546
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:80365923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCCGCCG CCCCACGGCG
  CTCAGGGCGG GAGGCTCGCC GGGAGGGCGG GGCAGCGCGC GCAGGTCAGC GGCGTAAGCG
  ACAGACACCC TCGGGCCTGC TCGCGGACGC GGCCTGGGAA GCGCGAAGGC AGTTCTAGGT
  TCGGCACCGC TAGCATTGTA GGGATTTGTA GTCCGCGAGC CCGTGGGGCA CCTCCCCTCC
  R
  GGTAGGCCGA CCCAGGCGTC CCCGCCCTCT GCACGAGGAC TTCCTGCCGC GGCTTAAACT
  ACAACTCCCG TCGTCCGCTG CGCCGAGGGC TGAAAGCGAA AACAAATTCT AGGCTGCGAG
  GTTGCTGCCC TCCGCCCGGC GCCCCTTCCC GCTCCCCGCC CCTCAGGCGC CCTCCGGCGA
  GGTGGGGAGA CGAGCGGCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375288936	MGP_WTSI_8_82163193	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253670546					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375288936	MGP_WTSI_8_82163193	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:80365923 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20624	CpG island 20624	within coordinates
Gm51579	predicted gene, 51579	within coordinates
Otud4	OTU domain containing 4	382 bp upstream
Rr400987	regulatory region 400987	within coordinates
Rr665883	regulatory region 665883	within coordinates
Tssr78137	transcription start site region 78137	57 bp upstream
Tssr78138	transcription start site region 78138	105 bp upstream
Tssr78139	transcription start site region 78139	132 bp upstream
Tssr78140	transcription start site region 78140	198 bp upstream
Tssr78141	transcription start site region 78141	348 bp upstream
Tssr78142	transcription start site region 78142	469 bp upstream
Tssr78143	transcription start site region 78143	882 bp upstream
Tssr78144	transcription start site region 78144	901 bp upstream
Tssr78145	transcription start site region 78145	929 bp upstream
Tssr81884	transcription start site region 81884	577 bp upstream